##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index12_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20905260	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.985974869482607	33.0	31.0	34.0	30.0	34.0
2	32.120472120413716	33.0	31.0	34.0	30.0	34.0
3	32.19154652943804	34.0	31.0	34.0	30.0	34.0
4	35.707106728163154	37.0	35.0	37.0	33.0	37.0
5	35.665230138252284	37.0	35.0	37.0	33.0	37.0
6	35.63694457758478	37.0	35.0	37.0	33.0	37.0
7	35.65245818516488	37.0	35.0	37.0	33.0	37.0
8	35.637516395395224	37.0	35.0	37.0	33.0	37.0
9	37.31225127073282	39.0	37.0	39.0	34.0	39.0
10-14	37.50282172046653	39.2	37.2	39.4	33.6	39.4
15-19	38.43573525514631	40.0	38.0	41.0	33.6	41.0
20-24	38.24809702438525	40.0	38.0	41.0	33.0	41.0
25-29	37.93644848234368	40.0	37.8	41.0	32.8	41.0
30-34	37.74099494576963	40.0	37.0	41.0	32.4	41.0
35-39	37.729791937531516	40.0	37.0	41.0	32.0	41.0
40-44	37.422801199315394	39.6	36.6	41.0	31.0	41.0
45-49	36.982738019044014	39.0	35.4	40.8	30.6	41.0
50-54	36.65732566827678	38.8	35.0	40.4	30.6	41.0
55-59	36.37247733823928	38.4	35.0	40.4	30.2	41.0
60-64	35.56786846946654	37.2	34.2	40.0	29.2	41.0
65-69	34.691556957435594	35.6	33.8	39.0	28.0	41.0
70-74	33.77311004024824	35.0	33.0	37.8	26.8	39.8
75-79	32.80928472547101	35.0	32.4	36.4	26.0	39.0
80-84	31.848969589471743	35.0	31.8	35.2	24.6	37.0
85-89	30.758744296889876	34.0	31.0	35.0	20.8	36.0
90	29.83947566306279	34.0	31.0	35.0	2.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	257.0
11	2463.0
12	7225.0
13	14224.0
14	22382.0
15	30366.0
16	37477.0
17	44406.0
18	50940.0
19	58448.0
20	68288.0
21	80455.0
22	93692.0
23	111318.0
24	132867.0
25	158203.0
26	190671.0
27	230402.0
28	280566.0
29	343238.0
30	422572.0
31	526681.0
32	664780.0
33	865488.0
34	1184220.0
35	1719794.0
36	2677963.0
37	3946242.0
38	4443919.0
39	2441843.0
40	53869.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.136171470720765	12.014469085770758	10.492230185130442	52.35712925837803
2	21.547254889184916	19.072727083110284	35.629995184511294	23.75002284319351
3	25.446158949892638	21.320748793579078	22.512999330196866	30.720092926331414
4	27.563691546988533	27.331494671373868	19.101343199511096	26.003470582126504
5	29.127920078909973	29.719113171119183	21.63073082318185	19.522235926788994
6	24.175934205624074	32.65210376020622	21.905708479967974	21.266253554201732
7	21.379325060428286	18.6718201646164	37.56744613889289	22.381408636062428
8	21.586708170345474	22.165039794026526	29.113692721665323	27.134559313962676
9	21.484932525746878	21.029168990628076	31.6311594704511	25.85473901317395
10-14	24.50005623583669	26.29293986458717	24.65935171824999	24.54765218132615
15-19	24.82855127320838	25.165088975758604	25.158834471094423	24.847525279938598
20-24	24.60284411319101	25.41776816914202	25.50892818246439	24.470459535202576
25-29	24.471220255928614	25.455264702513198	25.41860118217441	24.65491385938378
30-34	24.507217496627508	25.383571145016155	25.388121698014547	24.72108966034179
35-39	24.502746007377414	25.549042652715265	25.341422068442665	24.606789271464656
40-44	24.479580018158103	25.371451520604744	25.49991467042761	24.649053790809543
45-49	24.418120259233138	25.450321159836715	25.410906921733556	24.720651659196587
50-54	24.441867394567655	25.533090320176843	25.46806772586574	24.556974559389765
55-59	24.45995272668447	25.469638426517527	25.407237749516487	24.663171097281523
60-64	24.36139646286748	25.495897788533505	25.522547726407087	24.62015802219193
65-69	24.40870351140212	25.614322554651924	25.485205705917817	24.49176822802814
70-74	24.447269462682737	25.548442973230667	25.396005073284243	24.608282490802356
75-79	24.446643774457236	25.501584216028572	25.4777221923135	24.57404981720069
80-84	24.38883468460714	25.622322525496404	25.484340307421988	24.504502482474464
85-89	24.506543454695027	25.59106390220406	25.39415389870518	24.50823874439574
90	24.227331978442237	25.715677342768995	25.583769934956713	24.47322074383205
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.4933007290988
2	45.297277732378426
3	56.16625187622406
4	53.56716212911503
5	48.65015600569897
6	45.4421877598258
7	43.76073369649071
8	48.72126748430814
9	47.339671538920825
10-14	49.047708417162845
15-19	49.67607655314698
20-24	49.07330364839359
25-29	49.12613411531239
30-34	49.2283071569693
35-39	49.10953527884207
40-44	49.12863380896765
45-49	49.13877191842973
50-54	48.998841953957424
55-59	49.12312382396599
60-64	48.981554485059405
65-69	48.90047173943026
70-74	49.05555195348509
75-79	49.020693591657924
80-84	48.893337167081604
85-89	49.01478219909077
90	48.700552722274296
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	67.0
1	34.5
2	3.0
3	3.5
4	4.5
5	6.5
6	7.5
7	11.0
8	28.0
9	47.0
10	52.0
11	85.5
12	142.5
13	206.5
14	334.0
15	557.0
16	1039.0
17	1797.0
18	3065.5
19	5456.5
20	6991.0
21	9532.5
22	16112.5
23	26159.5
24	40138.5
25	59198.0
26	84232.0
27	116087.0
28	151043.0
29	189058.0
30	210027.0
31	229394.5
32	271063.0
33	319021.0
34	371766.0
35	422179.0
36	472353.0
37	530732.0
38	581615.5
39	623577.5
40	646186.0
41	658336.5
42	683999.5
43	709665.5
44	724272.0
45	728344.5
46	727089.0
47	720099.5
48	719612.5
49	720747.0
50	718254.0
51	711137.0
52	701973.5
53	690085.0
54	683390.0
55	683005.0
56	673059.5
57	658547.5
58	636680.0
59	608046.5
60	593182.0
61	577622.5
62	543633.5
63	500098.0
64	448437.0
65	395671.5
66	342231.5
67	286772.0
68	235665.5
69	188250.0
70	163711.0
71	142699.0
72	104301.5
73	72587.0
74	46985.5
75	27698.5
76	15140.5
77	7673.5
78	3311.0
79	1303.5
80	735.0
81	515.0
82	211.0
83	98.0
84	52.5
85	28.5
86	21.0
87	15.0
88	8.5
89	6.0
90	4.0
91	2.0
92	0.5
93	0.5
94	1.5
95	1.5
96	1.0
97	1.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008983385042807407
3	0.04576838556420729
4	0.046064961641232874
5	0.045677499347054284
6	0.008763344727594873
7	0.015359770698857609
8	0.011355993659012133
9	0.007926234832764577
10-14	0.010614553466448157
15-19	0.009212992328246575
20-24	0.01279199589002959
25-29	0.005274270685942198
30-34	0.011030716671306647
35-39	0.006964754324988064
40-44	0.002068378962997829
45-49	5.941088510738445E-4
50-54	0.0010475832398161994
55-59	0.0017153577616351103
60-64	6.964754324988065E-4
65-69	0.0074574532916596116
70-74	0.002947583526825306
75-79	0.004372105393570805
80-84	0.00187703955846519
85-89	0.0013317222555471685
90	0.013006296023106146
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.090526E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.16454541088325
#Duplication Level	Relative count
1	100.0
2	30.654693295890354
3	15.949242408365992
4	9.960810612569944
5	6.910535029444433
6	5.049563048808601
7	4.0268667351258465
8	3.225265628601966
9	2.6961041138378357
10++	31.095835865624412
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4418740	2.62497	5.5713434	1
CCTGG	4410640	2.604959	6.2376595	1
CTTCT	4584725	2.5094583	5.5832787	1
CTGGA	4194895	2.4449503	8.823388	1
TCCAG	4121900	2.3572576	5.761723	2
CTGCT	4075805	2.3173757	5.1716495	1
CTCCT	4146720	2.3133874	8.036679	1
CTGGG	3793875	2.2836087	8.486443	1
CAGGA	3830775	2.2457542	5.526809	1
CTTCA	4002400	2.2035038	5.7693124	1
CCCAG	3733465	2.176199	7.308245	1
CTCCA	3869250	2.171186	8.281978	1
CAGAA	3677955	2.0878165	5.0239296	1
CTCTG	3557875	2.0228965	6.393514	1
CTGGC	3208085	1.8947207	5.6083813	1
TGGAA	3248245	1.8683033	5.1327415	2
CTGAA	3258885	1.8391974	5.6009583	1
CTCAG	3030025	1.7328295	6.286419	1
CTTTG	3050395	1.7016182	5.104973	1
CTGGT	2889860	1.674554	5.24777	1
CTTGG	2824405	1.6366255	5.3831143	1
CTCCC	2732690	1.5538567	5.1831036	1
>>END_MODULE
